Index

A

a() (in module ColdTOFU.Physics.createAndDestroy) a_dag() (in module ColdTOFU.Physics.createAndDestroy) allenDev() (ColdTOFU.Physics.allenDeviation.TSeries method) allenVar() (ColdTOFU.Physics.allenDeviation.TSeries method) AndorSifFile (class in ColdTOFU.AndorSifReader) ANTSIF_PROPS (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_AT_32 (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_AT_64 (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_AT_8 (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_AT_U32 (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_AT_U64 (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_AT_U8 (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_Background (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_CalibX (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_CalibY (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_CalibZ (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_CONV (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_DATA_NOT_PRESENT (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_Double (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_FILE_ACCESS_ERROR (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_FILE_NOT_FOUND (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_Float (ColdTOFU.AndorSifReader.AndorSifFile attribute)

ATSIF_Live (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_NO_SIF_LOADED (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P1INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P2INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P3INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P4INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P5INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P6INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P7INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_P8INVALID (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_ReadAll (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_ReadHeaderOnly (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_Reference (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_SIF_FORMAT_ERROR (ColdTOFU.AndorSifReader.SifError attribute) ATSIF_Signal (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_Source (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_String (ColdTOFU.AndorSifReader.AndorSifFile attribute) ATSIF_SUCCESS (ColdTOFU.AndorSifReader.SifError attribute) averagedOD (ColdTOFU.Images.ShadowImage attribute) averagedOD2 (ColdTOFU.Images.ShadowImage attribute) averagedSignal() (ColdTOFU.Images.FluorescenceImage method) averagedSignalOD() (ColdTOFU.Images.ShadowImage method) averagedSignalOD2() (ColdTOFU.Images.ShadowImage method)

B

blueProbeIntensity() (ColdTOFU.Images.ShadowImage method)

bv() (in module ColdTOFU.spectrum) bvFit() (in module ColdTOFU.spectrum)

C

ColdTOFU module ColdTOFU.AndorSifReader module ColdTOFU.fits module ColdTOFU.Images module ColdTOFU.jupyterTools module ColdTOFU.numberOfAtoms module ColdTOFU.Physics module ColdTOFU.Physics.allenDeviation module

ColdTOFU.Physics.basisMatrices module ColdTOFU.Physics.beams module ColdTOFU.Physics.createAndDestroy module ColdTOFU.Physics.spinInDickeBasis module ColdTOFU.picoMatTools module ColdTOFU.sigma module ColdTOFU.spectrum module comment() (ColdTOFU.Images.ShadowImage method) complexBeamParameter() (ColdTOFU.Physics.beams.GaussianBeam method) compose() (ColdTOFU.Physics.basisMatrices.GellMannBasis method)

D

data (ColdTOFU.AndorSifReader.AndorSifFile attribute) data() (ColdTOFU.AndorSifReader.AndorSifFile property) decompose() (ColdTOFU.Physics.basisMatrices.GellMannBasis method) (ColdTOFU.Physics.basisMatrices.PauliBasis method)

description() (ColdTOFU.Images.ShadowImage method) disp() (in module ColdTOFU.jupyterTools)

E

ERROR_STR (ColdTOFU.AndorSifReader.SifError attribute)

ext (ColdTOFU.Images.ShadowImage attribute)

F

field() (ColdTOFU.Physics.beams.GaussianBeam method) filePath (ColdTOFU.Images.FluorescenceImage attribute) (ColdTOFU.Images.ShadowImage attribute) fluorescence() (ColdTOFU.Images.FluorescenceImage method)

FluorescenceImage (class in ColdTOFU.Images) fracFreq() (ColdTOFU.Physics.allenDeviation.TSeries method) frames (ColdTOFU.Images.FluorescenceImage attribute) (ColdTOFU.Images.ShadowImage attribute) FromCode() (ColdTOFU.AndorSifReader.SifError static method)

G

gaussian() (in module ColdTOFU.fits) gaussian2D() (in module ColdTOFU.fits) gaussian2DFit() (in module ColdTOFU.fits)

GaussianBeam (class in ColdTOFU.Physics.beams) gaussianFit() (in module ColdTOFU.fits) GellMannBasis (class in ColdTOFU.Physics.basisMatrices) gouyPhase() (ColdTOFU.Physics.beams.GaussianBeam method)

I

im (ColdTOFU.Images.FluorescenceImage attribute) (ColdTOFU.Images.ShadowImage attribute) images() (ColdTOFU.Images.FluorescenceImage method) (ColdTOFU.Images.ShadowImage method)

incidence (ColdTOFU.Images.ShadowImage attribute) intensity() (ColdTOFU.Physics.beams.GaussianBeam method)

L

lorentzian() (in module ColdTOFU.fits)

lorentzianFit() (in module ColdTOFU.fits)

M

matrices() (ColdTOFU.Physics.basisMatrices.GellMannBasis method) (ColdTOFU.Physics.basisMatrices.PauliBasis method) module ColdTOFU ColdTOFU.AndorSifReader ColdTOFU.fits ColdTOFU.Images ColdTOFU.jupyterTools ColdTOFU.numberOfAtoms ColdTOFU.Physics ColdTOFU.Physics.allenDeviation ColdTOFU.Physics.basisMatrices ColdTOFU.Physics.beams ColdTOFU.Physics.createAndDestroy ColdTOFU.Physics.spinInDickeBasis ColdTOFU.picoMatTools ColdTOFU.sigma ColdTOFU.spectrum

multipleGaussian2D() (in module ColdTOFU.fits) multipleGaussian2DFit() (in module ColdTOFU.fits)

N

n (ColdTOFU.Images.FluorescenceImage attribute) (ColdTOFU.Images.ShadowImage attribute)

numAtomsBlue() (in module ColdTOFU.numberOfAtoms) numAtomsGeneral() (in module ColdTOFU.numberOfAtoms) numAtomsRed() (in module ColdTOFU.numberOfAtoms)

O

oAllenDev() (ColdTOFU.Physics.allenDeviation.TSeries method) oAllenVar() (ColdTOFU.Physics.allenDeviation.TSeries method) OD (ColdTOFU.Images.ShadowImage attribute)

ODaveraged (ColdTOFU.Images.ShadowImage attribute) opticalDepth() (ColdTOFU.Images.ShadowImage method) opticalDepthAveraged() (ColdTOFU.Images.ShadowImage method)

P

params (ColdTOFU.Images.rcParams attribute) PauliBasis (class in ColdTOFU.Physics.basisMatrices) picoMatRead() (in module ColdTOFU.picoMatTools) plotAveragedSignal() (ColdTOFU.Images.FluorescenceImage method)

plotAveragedSignalOD() (ColdTOFU.Images.ShadowImage method) ProcessErrorCode() (ColdTOFU.AndorSifReader.SifError static method) props (ColdTOFU.AndorSifReader.AndorSifFile attribute) props() (ColdTOFU.AndorSifReader.AndorSifFile property) PSD() (in module ColdTOFU.picoMatTools)

R

R() (ColdTOFU.Physics.beams.GaussianBeam method) rcParams (class in ColdTOFU.Images)

redProbeIntensity() (ColdTOFU.Images.ShadowImage method) RIN() (in module ColdTOFU.picoMatTools)

S

S_m() (in module ColdTOFU.Physics.spinInDickeBasis) S_p() (in module ColdTOFU.Physics.spinInDickeBasis) S_x() (in module ColdTOFU.Physics.spinInDickeBasis) S_y() (in module ColdTOFU.Physics.spinInDickeBasis) S_z() (in module ColdTOFU.Physics.spinInDickeBasis) ShadowImage (class in ColdTOFU.Images) SifError (class in ColdTOFU.AndorSifReader) sigmaBlue() (in module ColdTOFU.sigma)

sigmaGeneral() (in module ColdTOFU.sigma) sigmaRed() (in module ColdTOFU.sigma) signal (ColdTOFU.AndorSifReader.AndorSifFile attribute) spectroscopy() (in module ColdTOFU.spectrum) spectroscopyFaddeva() (in module ColdTOFU.spectrum) Spin() (in module ColdTOFU.Physics.spinInDickeBasis) SpinAngularMomenta() (in module ColdTOFU.Physics.spinInDickeBasis) structureConstant() (ColdTOFU.Physics.basisMatrices.GellMannBasis method) structureConstants() (ColdTOFU.Physics.basisMatrices.GellMannBasis method)

T

tags (ColdTOFU.Images.FluorescenceImage attribute) (ColdTOFU.Images.ShadowImage attribute) temperature() (in module ColdTOFU.numberOfAtoms) threeGaussian2D() (in module ColdTOFU.fits)

threeGaussian2DFit() (in module ColdTOFU.fits) timeDiff() (ColdTOFU.Physics.allenDeviation.TSeries method) transmission (ColdTOFU.Images.ShadowImage attribute) TSeries (class in ColdTOFU.Physics.allenDeviation)

U

update() (ColdTOFU.Images.rcParams method)

update_progress() (in module ColdTOFU.jupyterTools)

W

w() (ColdTOFU.Physics.beams.GaussianBeam method)